BMC Genomics Last updated: 2010/Sep/06

iCOD : an integrated clinical omics database based on the systems-pathology view of disease

Kazuro Shimokawa*, Kaoru Mogushi, Satoshi Shoji, Atsuko Hiraishi, Hiroshi Mizushima*, Hiroshi Tanaka


This internet site http://omics.tmd.ac.jp/icod_pub_eng/download contains following data.

Clinical & Pathological Table File - file patho_table.tar.gz (5.9KB)
Contains Clinical and Pathological data file.
These files can be easily open using Microsoft Excel (.txt file).

Gene Expression File (.CEL) - file icod_cel.tar.gz (598MB)
Contains All of the Case data used in this database.
Affymetrix raw expression data (.CEL file).

2D3L Map(local environment) - file 2d3l_map_local.zip (5.6MB)
We distributes 2D3L Map on the local web environment and source code.
You can download datas for display at the Clinical Omics Data Analysis -> 2D-3L Map ->"Displayed datas download"

Internet sites for Pathological DB Project
For iCOD Japanese Version (Account needed)
For Integrated Biomedical Database Japanese Version (Account needed)
For Database Center for Life Science


Comments or suggestions should be sent to:
tanaka at bioinfo.tmd.ac.jp - author